Tested it out and indeed after booting back in .U3, the drives have popped back up. A bit of chin scratching for the devs?
Update: So it seems like somewhat expected outcome of the update - 'Note this can disable some expected functionality for Windows clients.' (samba.org)
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for thread: "Samba project announces important security update for May 24th - when will the FreeNAS update follow"
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