OK, all parts are ordered, and I decided to go with a Xeon CPU because I might want to virtualize down the road (if so, I will do it "correctly" by passing through the entire LSI controller with VT-d). For the curious, here's the final build with pricing. I'll probably need to order a few SATA cables of the appropriate length for my case but otherwise this is everything. The additional fan is for adding a second front fan to the case to ensure that all the drive bays are being cooled. I already have a UPS so it's not included in this list.
Fractal Design Define R5 Case: $90
Fractal Design Dynamic GP-14 140mm Fan: $16
SeaSonic S12G-450 450W PSU: $64
Supermicro X10SL7-F Motherboard: $252
Intel Xeon E3-1220V3 CPU: $180
Crucial 32GB ECC DDR3 RAM: $286
2x Sandisk Ultra Fit 32GB USB Flash Drive: $23
8x HGST 4TB NAS Hard Drive: $1208
Total Cost: $2119
This was slightly over my $2000 budget target, but not too badly. I could have easily stayed under by sticking with an i3 CPU or only going with 16GB of RAM, but I'm future-proofing this build as much as I can. I'm hoping to post a photo-diary of the build after this stuff comes in.
Irrelevant anecdote: I got a good laugh when I ordered the Xeon from eBay, as the payment ended up going to "Gem City Dancewear." I guess server processors are standard equipment for ballerinas these days. :p