The real question is whether you are running on of the hacked BIOS' or not. Assuming disk #5 and #6 are connected to the optical drive connector and eSATA connection, they run in an IDE emulation mode. To disable that and allow AHCI Support on those connections, you need to install a hacked BIOS.
For those drives, you'll need more RAM. Regardless of what HP says, you can put 16Gb of RAM in the box.
Nope definitely run the hacked BIOS, the disks can do read tests individually at 200MB/s apparently (surprisingly fast)
I've posted on another forum and someone surprisingly said, when they replaced their USB stick performance went up, that doesn't seem logical to me. Almost as if FreeNAS is locking up writing a log file perhaps when handling my ZFS writes to the array? It's plausible but I figured something booting from USB would load linux / bsd into ram and logs would be in ram until committed to the USB drive later / shutdown?
I don't have another spare port to plug in an SSD to test though.
I was considering trying IDE rather than AHCI emulation - but I've got people on other forums claiming vastly superior speeds when writing with FreeNAS :{
As for the RAM, yes, I know the box can support more RAM and it would be nice but 8gb on a 17TB array isn't the end of the world, I've seen many posts from people with 4 and even 2gb of ram still getting decent performance out of FreeNAS. I'm absolutely not convinced the problem is specifically the ram in this instance. If someone can tell me /precisely/ how to benchmark to 100% confirm it's a ram limitation, I'll consider it but just not convinced (sorry)
P.S I know this is MOSTLY irrelevant but I did a DBAN on the disks writing 0's, I got 70MB's sustained writing to all 6 disks at once that's 420MB/s. Now if you factor in the overhead of FreeNAS / ZFS, writing "real data" and what have you, even one FIFTH of the 420MB/s would be 84MB/s
What I really need is a fellow ZFS2, 6 disk N40L owner to chime in with their performance numbers to be honest.