How many drives? That looked like a 12 drive backplane, and 12 drives on a 600W PSU comes up a little short. "Server only pulls around 100 watts" is nearly irrelevant in the grand scheme of things, because it's stuff like spinup current, wire thickness, whether there are multiple 12V rails, etc., that can get you. That backplane looks to only have three "Molex" connectors, suggesting each one is supporting four drives. Since spinup current can be as much as three amps, that could mean that during spinup, you're trying to feed somewhere between 8-12A through a Molex pin. A legitimate actual Molex high quality pin is only rated for 11A, but that could easily be less because 18 gauge wire commonly used on lower wattage PSU assemblies is rated 10A max, and lower quality "generic" Molex pins often start to cook around 4-6 amps because they don't make great contact with the mating socket.
This leads to brownouts during spinup, which can permanently damage drives, and can lead to erratic operation. I'm specifically talking about this because that seems to correspond with what you have observed, you have a consistent problem that remains through cable and controller changes. Are the problematic drives on the far side of the board from the PSU connectors? Just a guess.
We have a
great thread that explains what's involved in proper power supply sizing, and why yours is probably a bit too small. That by itself isn't likely to be the issue, but it *could* be.
It's also possible that there are no smoothing capacitors on your backplane, which tends to make any PSU issues more obvious.