I am sorry, but I cannot give you much advice on jails. We use FreeNAS in a strictly storage capacity here.
You can probably rescue the contents of the jails by saving off a copy of all the data (maybe in a new dataset) and then setting up the basic jails and restoring the old data, but that's the several-decade UNIX admin in me talking, and if you're not confident of your UNIX-fu then your better options are probably:
1) Start over, or
2) Find a copy of your old configuration on the new NAS. FreeNAS makes configuration backups and stores them in /var/db/system, which is actually part of your pool. So you could log in on the console, look in there, see if it exists, and find the newest version. Copy it to your computer, then upload it to the NAS, making it the active configuration. My *guess* is that this will restore everything to the way it was. Or totally hose everything. We haven't had any need to do that here, so this is completely theoretical, untested, etc. I can't picture it causing any data loss to do so, but I could picture it possibly hosing things badly enough you'd need to reinstall FreeNAS and go with option 1). I think it's very likely to work, though.