Just wanted to follow-up on this post in case there are others out there who bought the Rackable C1000 with 16 drive SAS expander (there's still LOTS of them available on ebay)... We *were* able to get freenas working and have most of the questions I posed above worked out...
First of all, we had to ditch the LSI MegaRaid card in favor of the IBM M1015. I was able to find a pre-IT-Mode flashed card available on ebay for about $105... a bit higher than they used to be, but it does the job nicely. You'll also need mini-SAS to SAS cable mentioned in some_guy_named_ed's original post. We bought a 1M cable and it's more than long enough to do the job.
To change the MegaRaid card out for the M1015 card, there is a little clip you'll need to pull directly up on (on the far right of the port side of the c1000) to allow the removal of the PCI-e MegaRaid card. Once out, you'll need to attach the mini-SAS cable to one of the ports on the M1015 and run it out the opening created by removing the MegaRaid card... do not attempt to use the plate from the MegaRaid on the M1015... the mini-SAS cable won't fit out the front of the c1000 if you do that. Once you have it fished through the front of the c1000 box, you'll need to attach the internal mini-SAS cable run from the internal 2x2.5" SATA drive bay to the other port on the M1015... this step is a challenge... in our case, we had to cut the zip ties holding the power cables together and stretch it the cable as far as possible... after doing this, there was *just* enough room to connect the SATA to mini-SAS cable (already in the C1000 and previously connected to the MegaRaid card) to the M1015... it's almost kinked in there, but it did fit. (Note: We just left the battery and cables in there that were connected to the MegaRaid, but we will probably end up taking all that out to sell on ebay with the MegaRaid card itself since those cards are going for $75 or so and we now have no use for it...)
At this point, you're basically golden... just close up the c1000 and connect the cable sticking out of the front of the c1000 to the SAS expander and turn everything on (SAS Expander first, then c1000). We used a 4TB flash drive with the latest freenas boot image (for flash drives) (V. 9.2.1.5) and freenas loaded without incident the first time.
As for the noise issue, the c1000 is VERY loud... our solution is to build an acoustic dampening box to place the server in and place it in a part of the shop where no one works... I don't have any data to report on power consumption, but I don't expect it to be good news :)
The unit we bought came with 4x1TB WD Re4 Enterprise drives, which we setup in a RaidZ2 array. We were able to setup Apple shares with no issues whatsoever... to get CIFS shares working on 9.2.1.5 you will need to patch the install as described
here... thanks to Cyber Jock for the tutorial. Once the patch was applied, the freenas share started showing up in Windows without incident.
Next steps are to determine if I should go ahead and add a few more drives to my existing zpool (i.e. destroy it and rebuild it with 6 drives instead of 4) or if it will be better to simply add more vdevs later to enlarge the overall pool... It's been a lot of fun so far and a phenomenal learning experience... and, for an overall investment of around $450, I think we've ended up with a very high performing, highly expandable server.