I don't believe there's anything you can do other than reinstall FreeNAS onto another USB key (or that USB key). I can't think of any way around going to the site and getting physical access.
While it's still up, make sure you take a backup of the configuration. Once you reinstall FreeNAS, use that backup file.
Also you may want to take two USB keys to the site and use another one to mirror the boot drive. If boot mirroring was used here, you wouldn't require physical access to the server if this happened again - you would just detach the drive and re-attach it from the GUI, causing a resilver.